Class: Bio::Blast::Bl2seq::Report::Iteration

Bio::Bl2seq::Report::Iteration stores information about a iteration. Normally, it may contain some Bio::Bl2seq::Report::Hit objects.

Note that its main existance reason is to keep complatibility between Bio::Blast::Default::Report::* classes.

Methods

hits new

Public Class methods

new(data)

Creates a new Iteration object. It is designed to be called only internally from the Bio::Blast::Default::Report class. Users shall not use the method directly.

[Source]

    # File lib/bio/appl/bl2seq/report.rb, line 91
91:         def initialize(data)
92:           @f0stat = []
93:           @f0dbstat = Bio::Blast::Default::Report::AlwaysNil.instance
94:           @hits = []
95:           @num = 1
96:           while r = data[0] and /^\>/ =~ r
97:             @hits << Hit.new(data)
98:           end
99:         end

Public Instance methods

hits()

Returns the hits of the iteration. It returns an array of Bio::Bl2seq::Report::Hit objects.

[Source]

     # File lib/bio/appl/bl2seq/report.rb, line 103
103:         def hits; @hits; end