Class: Bio::Blast::Report::Hsp

align_len	[RW]	Length of the alignment used
bit_score	[RW]	Score (in bits) of HSP
density	[RW]	Score density
evalue	[RW]	E-value of HSP
gaps	[RW]	Number of gaps in HSP
hit_frame	[RW]	Translation frame of subject
hit_from	[RW]	Start of HSP in subject
hit_to	[RW]	End of HSP
hseq	[RW]	Alignment string for subject (with gaps)
hsp	[R]
identity	[RW]	Number of identities in HSP
midline	[RW]	Formating middle line
mismatch_count	[RW]	Available only for ’-m 8’ format outputs.
num	[RW]	HSP number
pattern_from	[RW]	Start of PHI-BLAST pattern
pattern_to	[RW]	End of PHI-BLAST pattern
percent_identity	[RW]	Available only for ’-m 8’ format outputs.
positive	[RW]	Number of positives in HSP
qseq	[RW]	Alignment string for the query (with gaps)
query_frame	[RW]	Translation frame of query
query_from	[RW]	Start of HSP in query
query_to	[RW]	End of HSP
score	[RW]	Sscore of HSP

     # File lib/bio/appl/blast/report.rb, line 314
314:     def initialize
315:       @hsp = {}
316:     end