Class Bio::Blast::WU::Report::Hit
In: lib/bio/appl/blast/wublast.rb
Parent: Default::Report::Hit

Bio::Blast::WU::Report::Hit contains information about a hit. It may contain some Bio::Blast::WU::Report::HSP objects.

Because it inherits Bio::Blast::Default::Report::Hit, please also refer Bio::Blast::Default::Report::Hit.

Methods

new   score  

Attributes

n_number  [R]  n-number (???)
pvalue  [R]  p-value

Public Class methods

new(data)

Creates a new Hit object. It is designed to be called only internally from the Bio::Blast::WU::Report::Iteration class. Users should not call the method directly.

[Source]

     # File lib/bio/appl/blast/wublast.rb, line 406
406:           def initialize(data)
407:             @f0hitname = data.shift
408:             @hsps = []
409:             while r = data.first
410:               if r =~ /^\s*(?:Plus|Minus) +Strand +HSPs\:/ then
411:                 data.shift
412:                 r = data.first
413:               end
414:               if /\A\s+Score/ =~ r then
415:                 @hsps << HSP.new(data)
416:               else
417:                 break
418:               end
419:             end
420:             @again = false
421:           end

Public Instance methods

score()

Returns score.

[Source]

     # File lib/bio/appl/blast/wublast.rb, line 424
424:           def score
425:             @score
426:           end

[Validate]