Class: Bio::FlatFile::Splitter::Template

Attributes

entry	[R]	the last entry string read from the stream (String)
entry	[W]	the last entry string read from the stream
entry_ended_pos	[W]	(end position of the entry) + 1
entry_ended_pos	[R]	(end position of the entry) + 1
entry_pos_flag	[RW]	a flag to write down entry start and end positions
entry_start_pos	[W]	start position of the entry
entry_start_pos	[R]	start position of the entry
parsed_entry	[R]	The last parsed entry read from the stream (entry data class). Note that it is valid only after get_parsed_entry is called, and the get_entry may not affect the parsed_entry attribute.
parsed_entry	[W]	the last entry as a parsed data object

Public Class methods

new(klass, bstream)

Creates a new splitter.

[Source]

    # File lib/bio/io/flatfile/splitter.rb, line 30
30:         def initialize(klass, bstream)
31:           @dbclass = klass
32:           @stream = bstream
33:           @entry_pos_flag = nil
34:         end

Public Instance methods

get_entry()

Gets entry as a string. (String)

[Source]

    # File lib/bio/io/flatfile/splitter.rb, line 47
47:         def get_entry
48:           raise NotImplementedError
49:         end

get_parsed_entry()

Gets entry as a data class‘s object

[Source]

    # File lib/bio/io/flatfile/splitter.rb, line 52
52:         def get_parsed_entry
53:           ent = get_entry
54:           if ent then
55:             self.parsed_entry = dbclass.new(ent)
56:           else
57:             self.parsed_entry = ent
58:           end
59:           parsed_entry
60:         end

rewind()

rewind the stream

[Source]

    # File lib/bio/io/flatfile/splitter.rb, line 42
42:         def rewind
43:           @stream.rewind
44:         end

skip_leader()

skips leader of the entry.

[Source]

    # File lib/bio/io/flatfile/splitter.rb, line 37
37:         def skip_leader
38:           raise NotImplementedError
39:         end

Methods

Attributes

Public Class methods

Public Instance methods