Class Bio::FlatFileIndex::Indexer::Parser::EMBLParser
In: lib/bio/io/flatfile/indexer.rb
Parent: TemplateParser

Methods

new  

Constants

NAMESTYLE = NameSpaces.new( NameSpace.new( 'ID', Proc.new { |x| x.entry_id } ), NameSpace.new( 'AC', Proc.new { |x| x.accessions } ), NameSpace.new( 'SV', Proc.new { |x| x.sv } ), NameSpace.new( 'DR', Proc.new { |x| y = []
PRIMARY = 'ID'
SECONDARY = [ 'AC', 'SV' ]

Public Class methods

new(pri_name = nil, sec_names = nil)

[Source]

     # File lib/bio/io/flatfile/indexer.rb, line 219
219:           def initialize(pri_name = nil, sec_names = nil)
220:             super()
221:             self.format = 'embl'
222:             self.dbclass = Bio::EMBL
223:             self.set_primary_namespace((pri_name or PRIMARY))
224:             unless sec_names then
225:               sec_names = self.class::SECONDARY
226:             end
227:             self.add_secondary_namespaces(*sec_names)
228:           end

[Validate]