Class Bio::FlatFileIndex::Indexer::Parser::GenBankParser
In: lib/bio/io/flatfile/indexer.rb
Parent: TemplateParser

Methods

new  

Constants

NAMESTYLE = NameSpaces.new( NameSpace.new( 'VERSION', Proc.new { |x| x.acc_version } ), NameSpace.new( 'LOCUS', Proc.new { |x| x.entry_id } ), NameSpace.new( 'ACCESSION', Proc.new { |x| x.accessions } ), NameSpace.new( 'GI', Proc.new { |x| x.gi.to_s.gsub(/\AGI\:/, '') } )
PRIMARY = 'VERSION'

Public Class methods

new(pri_name = nil, sec_names = nil)

[Source]

     # File lib/bio/io/flatfile/indexer.rb, line 183
183:           def initialize(pri_name = nil, sec_names = nil)
184:             super()
185:             self.format = 'genbank'
186:             self.dbclass = Bio::GenBank
187:             self.set_primary_namespace((pri_name or PRIMARY))
188:             unless sec_names then
189:               sec_names = []
190:               @namestyle.each_value do |x|
191:                 sec_names << x.name if x.name != self.primary.name
192:               end
193:             end
194:             self.add_secondary_namespaces(*sec_names)
195:           end

[Validate]