Class Bio::FlatFileIndex::Indexer::Parser::MaXMLClusterParser
In: lib/bio/io/flatfile/indexer.rb
Parent: TemplateParser

Methods

new  

Constants

NAMESTYLE = NameSpaces.new( NameSpace.new( 'id', Proc.new { |x| x.entry_id } ), NameSpace.new( 'altid', Proc.new { |x| x.sequences.id_strings } ), NameSpace.new( 'datasrc', Proc.new { |x| a = x.sequences.collect { |y| MaXMLSequenceParser::NAMESTYLE['datasrc'].proc.call(y)
PRIMARY = 'id'
SECONDARY = [ 'altid', 'gene_ontology', 'datasrc' ]

Public Class methods

new(pri_name = nil, sec_names = nil)

[Source]

     # File lib/bio/io/flatfile/indexer.rb, line 359
359:           def initialize(pri_name = nil, sec_names = nil)
360:             super()
361:             self.format = 'raw'
362:             self.dbclass = Bio::FANTOM::MaXML::Cluster
363:             self.set_primary_namespace((pri_name or PRIMARY))
364:             unless sec_names then
365:               sec_names = self.class::SECONDARY
366:             end
367:             self.add_secondary_namespaces(*sec_names)
368:           end

[Validate]