Class Bio::GenPept
In: lib/bio/db/genbank/genpept.rb
Parent: NCBIDB

Methods

aalen   aaseq   circular   date   dbsource   division   entry_id   length   locus   seq   seq_len  

Included Modules

Bio::NCBIDB::Common

Classes and Modules

Class Bio::GenPept::Locus

Public Instance methods

aalen()

Alias for length

aaseq()

Alias for seq

circular()

[Source]

    # File lib/bio/db/genbank/genpept.rb, line 35
35:   def circular;         locus.circular;                end
date()

[Source]

    # File lib/bio/db/genbank/genpept.rb, line 37
37:   def date;             locus.date;                end
dbsource()

DBSOURCE

[Source]

    # File lib/bio/db/genbank/genpept.rb, line 55
55:   def dbsource
56:     get('DBSOURCE')
57:   end
division()

[Source]

    # File lib/bio/db/genbank/genpept.rb, line 36
36:   def division;         locus.division;                end
entry_id()

[Source]

    # File lib/bio/db/genbank/genpept.rb, line 33
33:   def entry_id;         locus.entry_id;                end
length()

[Source]

    # File lib/bio/db/genbank/genpept.rb, line 34
34:   def length;           locus.length;            end
locus()

[Source]

    # File lib/bio/db/genbank/genpept.rb, line 30
30:   def locus
31:     @data['LOCUS'] ||= Locus.new(get('LOCUS'))
32:   end
seq()

ORIGIN

[Source]

    # File lib/bio/db/genbank/genpept.rb, line 41
41:   def seq
42:     unless @data['SEQUENCE']
43:       origin
44:     end
45:     Bio::Sequence::AA.new(@data['SEQUENCE'])
46:   end
seq_len()

[Source]

    # File lib/bio/db/genbank/genpept.rb, line 50
50:   def seq_len
51:     seq.length
52:   end

[Validate]