Class Bio::Hinv
In: lib/bio/io/hinv.rb
Parent: Object

Methods

acc2hit   hit2acc   hit_cnt   hit_definition   hit_pubmedid   hit_xml   hix2hit   hix_cnt   hix_represent   id_search   keyword_search  

Classes and Modules

Module Bio::Hinv::Common
Class Bio::Hinv::Acc2hit
Class Bio::Hinv::Hit2acc
Class Bio::Hinv::HitCnt
Class Bio::Hinv::HitDefinition
Class Bio::Hinv::HitPubmedId
Class Bio::Hinv::HitXML
Class Bio::Hinv::Hix2hit
Class Bio::Hinv::HixCnt
Class Bio::Hinv::HixRepresent
Class Bio::Hinv::HixXML
Class Bio::Hinv::IdSearch
Class Bio::Hinv::KeywordSearch

Constants

BASE_URI = "http://www.jbirc.aist.go.jp/hinv/hws/"

Public Class methods

acc2hit(acc)

Bio::Hinv.acc2hit("BC053657") # => "HIT000053961"

[Source]

    # File lib/bio/io/hinv.rb, line 36
36:     def self.acc2hit(acc)
37:       serv = Acc2hit.new
38:       serv.query("acc" => acc)
39:       serv.result
40:     end
hit2acc(hit)

Bio::Hinv.hit2acc("HIT000022181") # => "AK097327"

[Source]

    # File lib/bio/io/hinv.rb, line 43
43:     def self.hit2acc(hit)
44:       serv = Hit2acc.new
45:       serv.query("hit" => hit)
46:       serv.result
47:     end
hit_cnt()

Bio::Hinv.hit_cnt # => 187156

[Source]

    # File lib/bio/io/hinv.rb, line 50
50:     def self.hit_cnt
51:       serv = HitCnt.new
52:       serv.query
53:       serv.result
54:     end
hit_definition(hit)

Bio::Hinv.hit_definition("HIT000000001") # => "Rho guanine …"

[Source]

    # File lib/bio/io/hinv.rb, line 57
57:     def self.hit_definition(hit)
58:       serv = HitDefinition.new
59:       serv.query("hit" => hit)
60:       serv.result
61:     end
hit_pubmedid(hit)

Bio::Hinv.hit_pubmedid("HIT000053961") # => [7624364, 11279095, … ]

[Source]

    # File lib/bio/io/hinv.rb, line 64
64:     def self.hit_pubmedid(hit)
65:       serv = HitPubmedId.new
66:       serv.query("hit" => hit)
67:       serv.result
68:     end
hit_xml(hit)

Bio::Hinv.hit_xml("HIT000000001") # => "<?xml version="1.0" …"

[Source]

    # File lib/bio/io/hinv.rb, line 71
71:     def self.hit_xml(hit)
72:       serv = Bio::Hinv::HitXML.new
73:       serv.query("hit" => hit)
74:       puts serv.result
75:     end
hix2hit(hix)

Bio::Hinv.hix2hit("HIX0000004") # => ["HIT000012846", … ]

[Source]

    # File lib/bio/io/hinv.rb, line 78
78:     def self.hix2hit(hix)
79:       serv = Bio::Hinv::Hix2hit.new
80:       serv.query("hix" => hix)
81:       serv.result
82:     end
hix_cnt()

Bio::Hinv.hix_cnt # => 36073

[Source]

    # File lib/bio/io/hinv.rb, line 85
85:     def self.hix_cnt
86:       serv = HixCnt.new
87:       serv.query
88:       serv.result
89:     end
hix_represent(hix)

Bio::Hinv.hix_represent("HIX0000001") # => "HIT000022181"

[Source]

    # File lib/bio/io/hinv.rb, line 92
92:     def self.hix_represent(hix)
93:       serv = HixRepresent.new
94:       serv.query("hix" => hix)
95:       serv.result
96:     end
id_search(query)

Bio::Hinv.id_search("HIT00002218*") # => ["HIT000022181", … ]

[Source]

     # File lib/bio/io/hinv.rb, line 99
 99:     def self.id_search(query)
100:       serv = IdSearch.new
101:       serv.query("query" => query)
102:       serv.result
103:     end
keyword_search(query)

Bio::Hinv.keyword_search("HIT00002218*") # => ["HIT000022181", … ]

[Source]

     # File lib/bio/io/hinv.rb, line 106
106:     def self.keyword_search(query)
107:       serv = KeywordSearch.new
108:       serv.query("query" => query)
109:       serv.result
110:     end

[Validate]