Class Bio::KEGG::REACTION
In: lib/bio/db/kegg/reaction.rb
Parent: KEGGDB

Methods

definition   entry_id   enzymes   equation   name   new   pathways   rpairs  

Constants

DELIMITER = RS = "\n///\n"
TAGSIZE = 12

Public Class methods

new(entry)

[Source]

    # File lib/bio/db/kegg/reaction.rb, line 20
20:   def initialize(entry)
21:     super(entry, TAGSIZE)
22:   end

Public Instance methods

definition()

DEFINITION

[Source]

    # File lib/bio/db/kegg/reaction.rb, line 35
35:   def definition
36:     field_fetch('DEFINITION')
37:   end
entry_id()

ENTRY

[Source]

    # File lib/bio/db/kegg/reaction.rb, line 25
25:   def entry_id
26:     field_fetch('ENTRY')[/\S+/]
27:   end
enzymes()

ENZYME

[Source]

    # File lib/bio/db/kegg/reaction.rb, line 58
58:   def enzymes
59:     unless @data['ENZYME']
60:       @data['ENZYME'] = fetch('ENZYME').scan(/\S+/)
61:     end
62:     @data['ENZYME']
63:   end
equation()

EQUATION

[Source]

    # File lib/bio/db/kegg/reaction.rb, line 40
40:   def equation
41:     field_fetch('EQUATION')
42:   end
name()

NAME

[Source]

    # File lib/bio/db/kegg/reaction.rb, line 30
30:   def name
31:     field_fetch('NAME') 
32:   end
pathways()

PATHWAY

[Source]

    # File lib/bio/db/kegg/reaction.rb, line 53
53:   def pathways
54:     lines_fetch('PATHWAY') 
55:   end
rpairs()

RPAIR

[Source]

    # File lib/bio/db/kegg/reaction.rb, line 45
45:   def rpairs
46:     unless @data['RPAIR']
47:       @data['RPAIR'] = fetch('RPAIR').split(/\s+/)
48:     end
49:     @data['RPAIR']
50:   end

[Validate]