Class Bio::NCBI::SOAP
In: lib/bio/io/ncbisoap.rb
Parent: Bio::SOAPWSDL

References

Methods

All methods accept a hash as its argument and most of the keys can be ommited (values are string).

Note: Methods which name ends with _MS are designed for use with Microsoft Visual Studio and SOAP Toolkit 3.0

  • www.ncbi.nlm.nih.gov/entrez/query/static/esoap_ms_help.html
  • run_eFetch(_MS)
    • "db", "id", "WebEnv", "query_key", "tool", "email", "retstart", "retmax", "rettype", "strand", "seq_start", "seq_stop", "complexity", "report"
  • run_eGquery(_MS)
    • "term", "tool", "email"
  • run_eInfo(_MS)
    • "db", "tool", "email"
  • run_eSpell(_MS)
    • "db", "term", "tool", "email"
  • run_eLink(_MS)
    • "db", "id", "reldate", "mindate", "maxdate", "datetype", "term" "dbfrom", "WebEnv", "query_key", "cmd", "tool", "email"
  • run_eSearch(_MS)
    • "db", "term", "WebEnv", "QueryKey", "usehistory", "tool", "email", "field", "reldate", "mindate", "maxdate", "datetype", "RetStart", "RetMax", "rettype", "sort"
  • run_eSummary(_MS)
    • "db", "id", "WebEnv", "query_key", "retstart", "retmax", "tool", "email"

Complex data types

Methods

method_missing   new  

Classes and Modules

Class Bio::NCBI::SOAP::EFetch
Class Bio::NCBI::SOAP::EFetchLite
Class Bio::NCBI::SOAP::EUtils
Class Bio::NCBI::SOAP::EUtilsLite

Constants

BASE_URI = "http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/"
SERVER_URI = BASE_URI + "eutils.wsdl"   set default to EUtils

Public Class methods

new(wsdl = nil)

[Source]

    # File lib/bio/io/ncbisoap.rb, line 73
73:   def initialize(wsdl = nil)
74:     super(wsdl || self.class::SERVER_URI)
75:   end

Public Instance methods

method_missing(*arg)

[Source]

    # File lib/bio/io/ncbisoap.rb, line 77
77:   def method_missing(*arg)
78:     sleep 3                     # make sure to rest for 3 seconds per request
79:     @driver.send(*arg)
80:   end

[Validate]