Module Bio::PDB::HetatmFinder
In: lib/bio/db/pdb/utils.rb

methods to access HETATMs

XXX#each_heterogen must be defined.

Bio::PDB::HetatmFinder is included by Bio::PDB::PDB, Bio::PDB::Model, Bio::PDB::Chain, and Bio::PDB::Heterogen.

Methods

each_hetatm   find_hetatm   hetatms  

Public Instance methods

each_hetatm() {|hetatm| ...}

iterates over each HETATM

[Source]

     # File lib/bio/db/pdb/utils.rb, line 355
355:     def each_hetatm(&x) #:yields: hetatm
356:       self.each_heterogen { |heterogen| heterogen.each(&x) }
357:     end
find_hetatm() {|hetatm| ...}

returns an array containing all HETATMs for which given block is not false (similar to Enumerable#find_all).

[Source]

     # File lib/bio/db/pdb/utils.rb, line 346
346:     def find_hetatm
347:       array = []
348:       self.each_hetatm do |hetatm|
349:         array.push(hetatm) if yield(hetatm)
350:       end
351:       return array
352:     end
hetatms()

returns all HETATMs

[Source]

     # File lib/bio/db/pdb/utils.rb, line 360
360:     def hetatms
361:       array = []
362:       self.each_heterogen { |heterogen| array.concat(heterogen.hetatms) }
363:       return array
364:     end

[Validate]