# File lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb, line 23
23:   def initialize( left, right=left )
24:     raise "left > right" if left > right
25: 
26:     # The 'range' here is actually off by one on the left
27:     # side in relation to a normal CutRange, so using the normal
28:     # variables from CutRange would result in bad behavior.
29:     #
30:     # See below - the first horizontal cut is the primary cut plus one.
31:     #
32:     #    1 2 3 4 5 6 7
33:     #    G A|T T A C A
34:     #       +-----+
35:     #    C T A A T|G T
36:     #    1 2 3 4 5 6 7
37:     # 
38:     # Primary cut = 2
39:     # Complement cut = 5
40:     # Horizontal cuts = 3, 4, 5
41: 
42:     @p_cut_left = nil
43:     @p_cut_right = nil
44:     @c_cut_left = nil
45:     @c_cut_right = nil
46:     @min = left  # NOTE this used to be 'nil', make sure all tests work
47:     @max = right # NOTE this used to be 'nil', make sure all tests work
48:     @range = (@min..@max) unless @min == nil or @max == nil # NOTE this used to be 'nil', make sure all tests work
49:     
50: 
51:     @hcuts = (left..right)
52:   end

    # File lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb, line 61
61:   def include?(i)
62:     @range.include?(i)
63:   end