Class Bio::SOSUI::Report
In: lib/bio/appl/sosui/report.rb
Parent: Object

Methods

new  

Classes and Modules

Class Bio::SOSUI::Report::TMH

Constants

DELIMITER = "\n>"   Delimiter
RS = DELIMITER

Attributes

entry_id  [R]  Query entry_id
prediction  [R]  Returns the prediction result whether "MEMBRANE PROTEIN" or "SOLUBLE PROTEIN".
tmhs  [R]  Transmembrane helixes ary

Public Class methods

new(output_report)

Parser for SOSUI output report.

[Source]

    # File lib/bio/appl/sosui/report.rb, line 43
43:       def initialize(output_report)
44:         entry       = output_report.split(/\n/)
45: 
46:         @entry_id   = entry[0].strip.sub(/^>/,'')
47:         @prediction = entry[1].strip
48:         @tms        = 0
49:         @tmhs       = []
50:         parse_tmh(entry) if /MEMBRANE/ =~ @prediction
51:       end

[Validate]