Class Bio::SiRNA::Pair
In: lib/bio/util/sirna.rb
Parent: Object

Methods

new   report  

Attributes

antisense  [RW] 
gc_percent  [RW] 
rule  [RW] 
sense  [RW] 
start  [RW] 
stop  [RW] 
target  [RW] 

Public Class methods

new(target, sense, antisense, start, stop, rule, gc_percent)

[Source]

     # File lib/bio/util/sirna.rb, line 152
152:       def initialize(target, sense, antisense, start, stop, rule, gc_percent)
153:         @target     = target
154:         @sense      = sense
155:         @antisense  = antisense
156:         @start      = start
157:         @stop       = stop
158:         @rule       = rule
159:         @gc_percent = gc_percent
160:       end

Public Instance methods

report()

human readable report

[Source]

     # File lib/bio/util/sirna.rb, line 163
163:       def report
164:         report =  "### siRNA\n"
165:         report << 'Start: ' + @start.to_s + "\n"
166:         report << 'Stop:  ' + @stop.to_s  + "\n"
167:         report << 'Rule:  ' + @rule.to_s  + "\n"
168:         report << 'GC %:  ' + @gc_percent.to_s  + "\n"
169:         report << 'Target:    '        + @target.upcase + "\n"
170:         report << 'Sense:     ' + '  ' + @sense.upcase  + "\n"
171:         report << 'Antisense: '        + @antisense.reverse.upcase + "\n"
172:       end

[Validate]