Class Bio::Sim4::Report::Segment
In: lib/bio/appl/sim4/report.rb
Parent: Object

Segment informations of a segment pair.

Methods

new  

Attributes

from  [R]  start position of the segment (the first position is 1)
seq  [R]  sequence (with gaps) of the segment
to  [R]  end position of the segment (including its position)

Public Class methods

new(pos_st, pos_ed, seq = nil)

Creates a new Segment object. It is designed to be called internally from Bio::Sim4::Report::SegmentPair class. Users shall not use it directly.

[Source]

     # File lib/bio/appl/sim4/report.rb, line 242
242:         def initialize(pos_st, pos_ed, seq = nil)
243:           @from = pos_st.to_i
244:           @to   = pos_ed.to_i
245:           @seq  = seq
246:         end

[Validate]