Class Bio::TMHMM
In: lib/bio/appl/tmhmm/report.rb
Parent: Object

Methods

reports  

Classes and Modules

Class Bio::TMHMM::Report
Class Bio::TMHMM::TMH

Public Class methods

reports(data) {|Bio::TMHMM::Report.new(entry)| ...}

Splits multiple reports into a report entry.

[Source]

    # File lib/bio/appl/tmhmm/report.rb, line 25
25:     def TMHMM.reports(data)
26:       entry     = []
27:       ent_state = ''
28:       data.each_line do |line|
29:         if /^\#/ =~ line
30:           if ent_state == 'next'
31:             ent_state = 'entry'
32:           elsif ent_state == 'tmh'
33:             ent_state = 'next'
34:           end
35:         else
36:           ent_state = 'tmh'
37:         end
38: 
39:         if ent_state != 'next'
40:           entry << line
41:         else
42:           if block_given?
43:             yield Bio::TMHMM::Report.new(entry)
44:           else
45:             Bio::TMHMM::Report.new(entry)
46:           end
47:           entry = [line]
48:         end
49:       end
50: 
51:       if block_given?
52:         yield Bio::TMHMM::Report.new(entry)
53:       else
54:         Bio::TMHMM::Report.new(entry)
55:       end
56:     end

[Validate]