Class Bio::TRANSFAC::FACTOR
In: lib/bio/db/transfac.rb
Parent: TRANSFAC

Methods

bs   cl   cn   cp   dr   fa   ff   ft   ho   in   mx   new   sc   sf   sq   sy   sz  

Public Class methods

new(entry)

[Source]

     # File lib/bio/db/transfac.rb, line 199
199:     def initialize(entry)
200:       super(entry)
201:     end

Public Instance methods

bs()

BS Bound sites (site accession no.; site ID; quality: N; biological BS species)

[Source]

     # File lib/bio/db/transfac.rb, line 284
284:     def bs
285:       field_fetch('BS')
286:     end
cl()

CL Classification (class accession no.; class identifier; decimal CL classification number.)

[Source]

     # File lib/bio/db/transfac.rb, line 225
225:     def cl
226:       field_fetch('CL')
227:     end
cn()

CN Cell specificity (negative)

[Source]

     # File lib/bio/db/transfac.rb, line 262
262:     def cn
263:       field_fetch('CN')
264:     end
cp()

CP Cell specificity (positive)

[Source]

     # File lib/bio/db/transfac.rb, line 257
257:     def cp
258:       field_fetch('CP')
259:     end
dr()

DR Cross-references to other databases (>=0 per entry)

[Source]

     # File lib/bio/db/transfac.rb, line 214
214:     def dr
215:       field_fetch('DR')
216:     end
fa()

FA Factor name

[Source]

     # File lib/bio/db/transfac.rb, line 204
204:     def fa
205:       field_fetch('FA')
206:     end
ff()

FF Functional features

[Source]

     # File lib/bio/db/transfac.rb, line 267
267:     def ff
268:       field_fetch('FF')
269:     end
ft()

FT Feature table (1st position last position feature)

[Source]

     # File lib/bio/db/transfac.rb, line 247
247:     def ft
248:       field_fetch('FT')
249:     end
ho()

HO Homologs (suggested)

[Source]

     # File lib/bio/db/transfac.rb, line 219
219:     def ho
220:       field_fetch('HO')
221:     end
in()

IN Interacting factors (factor accession no.; factor name; IN biological species.)

[Source]

     # File lib/bio/db/transfac.rb, line 273
273:     def in
274:       field_fetch('IN')
275:     end
mx()

MX Matrix (matrix accession no.; matrix identifier)

[Source]

     # File lib/bio/db/transfac.rb, line 278
278:     def mx
279:       field_fetch('MX')
280:     end
sc()

SC Sequence comment, i. e. source of the protein sequence

[Source]

     # File lib/bio/db/transfac.rb, line 242
242:     def sc
243:       field_fetch('SC')
244:     end
sf()

SF Structural features

[Source]

     # File lib/bio/db/transfac.rb, line 252
252:     def sf
253:       field_fetch('SF')
254:     end
sq()

SQ Sequence

[Source]

     # File lib/bio/db/transfac.rb, line 237
237:     def sq
238:       field_fetch('SQ')
239:     end
sy()

SY Synonyms

[Source]

     # File lib/bio/db/transfac.rb, line 209
209:     def sy
210:       field_fetch('SY')
211:     end
sz()

SZ Size (length (number of amino acids); calculated molecular mass SZ in kDa; experimental molecular mass (or range) in kDa SZ (experimental method) [Ref]

[Source]

     # File lib/bio/db/transfac.rb, line 232
232:     def sz
233:       field_fetch('SZ')
234:     end

[Validate]