# File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb, line 13
13:   def have_results
14:     Bio::Shell.cache[:results].number > 0
15:   end

    # File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb, line 17
17:   def local_variables
18:     eval("local_variables", Bio::Shell.cache[:binding]) -
19:       BiorubyController::HIDE_VARIABLES
20:   end

    # File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb, line 5
 5:   def project_workdir
 6:     if Bio::Shell.cache[:savedir].match(/\.bioruby$/)
 7:       Bio::Shell.cache[:workdir]
 8:     else
 9:       Bio::Shell.cache[:savedir]
10:     end
11:   end

    # File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb, line 30
30:   def reference_link(class_or_module)
31:     name = class_or_module.to_s
32:     case name
33:     when /Bio::(.+)/
34:       path = $1.split('::').join('/')
35:       url = "http://bioruby.org/rdoc/classes/Bio/#{path}.html"
36:     when /Chem::(.+)/
37:       path = $1.split('::').join('/')
38:       url = "http://chemruby.org/rdoc/classes/Chem/#{path}.html"
39:     else
40:       path = name.split('::').join('/')
41:       url = "http://www.ruby-doc.org/core/classes/#{path}.html"
42:     end
43:     return "<a href='#{url}'>#{name}</a>"
44:   end

    # File lib/bio/shell/rails/vendor/plugins/bioruby/generators/bioruby/templates/bioruby_helper.rb, line 22
22:   def render_log(page)
23:     page.insert_html :top, :logs, :partial => "log"
24:     page.replace_html "variables", :partial => "variables"
25:     page.hide "methods_#{@number}"
26:     page.hide "classes_#{@number}"
27:     page.hide "modules_#{@number}"
28:   end